RASPODOM ONLINE FORM
Rapid Motif-Based Prediction of Circular Permutations in Multi-Domain Proteins
Input two sequences. The format used is custom: each sequence
starts with a ">" character followed by a unique sequence name. Each of the
following lines is a number corresponding to one domain (you can simply
strip the "PD" from the prodom domain ID's). Next sequences follow -- just
like a in a regular fasta file. Here is an example; click on the "submit"
button to see how it renders.