Just how versatile are domains?
[ DVI ]
- Supplementary Figures: Number of occurences vs.
number of neighbors for different domains (a separate plot for each
- Supplementary Table 1: Full results (tab separated table)
columns: domain, dvi, dvi error, domain description
- Comparison of different
measures and domain age (tab separated table); NCO - number of
cooccurences; NN- number of neighbors; NTRP - number of triplets ; N -
number of occurences.
- Comparison of DVI derived from
different measures. The DVI has been calculated based on regression of
[measure] over number of occurences, where [measure] is one of: NN (number
of immediate neighbors), NCO (number of cooccurences) or NTRP (number of
Calculated correlation coefficients (all coefficients significant with p < 1e-15):
|G_n||Number of genomes|
|lreg||DVI based on NN|
|lerr||,, ,, ,, -- error|
|tlreg||DVI based on NTRP|
|tlerr||,, ,, ,, -- error|
|clreg||DVI based on NCO|
|clerr||,, ,, ,, -- error|
| lreg||1.0 ||0.7 ||0.9|
|clreg|| ||1.0 ||0.6|
|tlreg|| || ||1.0|
- Results for PFAM Clans
- Archive containing the domain arrangements from 10,746 species in the XDOM format. File size: 46M; format: tar gzipped archive; contains 10,746 files.