 Supplementary Figures: Number of occurences vs.
number of neighbors for different domains (a separate plot for each
domain).
 Supplementary Table 1: Full results (tab separated table)
columns: domain, dvi, dvi error, domain description
 Comparison of different
measures and domain age (tab separated table); NCO  number of
cooccurences; NN number of neighbors; NTRP  number of triplets ; N 
number of occurences.
 Comparison of DVI derived from
different measures. The DVI has been calculated based on regression of
[measure] over number of occurences, where [measure] is one of: NN (number
of immediate neighbors), NCO (number of cooccurences) or NTRP (number of
triplets). Columns:
Column name  Description 
G_n  Number of genomes 
lreg  DVI based on NN 
lerr  ,, ,, ,,  error 
tlreg  DVI based on NTRP 
tlerr  ,, ,, ,,  error 
clreg  DVI based on NCO 
clerr  ,, ,, ,,  error 
Calculated correlation coefficients (all coefficients significant with p < 1e15):
 lreg  clreg  tlreg 
lreg  1.0  0.7  0.9 
clreg   1.0  0.6 
tlreg    1.0 
 Results for PFAM Clans
 Archive containing the domain arrangements from 10,746 species in the XDOM format. File size: 46M; format: tar gzipped archive; contains 10,746 files.
